If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ), 'gf_id' => 'HOM05D000743', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000743' ), 'data_identifier' => 'HOM05D000743', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000743', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '85' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A10p08800' => 'bna', 'Aa31csc1168G20' => 'aar', 'Aa31csc39G200' => 'aar', 'Aa31csc464G20' => 'aar', 'Aa31sc2803G10' => 'aar', 'Actinidia04342' => 'ach', 'Ah.04g161620' => 'amhyb', 'Ah.09g227330' => 'amhyb', 'Ah.10g027640' => 'amhyb', 'Ah.10g027760' => 'amhyb', 'Ah.10g028530' => 'amhyb', 'AL2G20970' => 'aly', 'AL3G48830' => 'aly', 'Aqoxy4G01617' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4E2K1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4R8S2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF7BT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AG3GZU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BY1G47' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2VWYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GV9JXL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J73SET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUTV4U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4EZ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY24MX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBNI57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZUEQ40' => 'arhy', 'AT2G07698' => 'ath', 'ATCG00120' => 'ath', 'ATMG01190' => 'ath', 'ATMG01200' => 'ath', 'ATR0299G001' => 'atr', 'Atru.chr1.2340' => 'acertr', 'Atru.chr5.1329' => 'acertr', 'AUR62007726' => 'cqu', 'AUR62012107' => 'cqu', 'AUR62026822' => 'cqu', 'AUR62030348' => 'cqu', 'AUR62034209' => 'cqu', 'AUR62037772' => 'cqu', 'AUR62037773' => 'cqu', 'AUR62037774' => 'cqu', 'AUR62037880' => 'cqu', 'AUR62040471' => 'cqu', 'AUR62041556' => 'cqu', 'AUR62042122' => 'cqu', 'AUR62042354' => 'cqu', 'AUR62043345' => 'cqu', 'AUR62043788' => 'cqu', 'AUR62043899' => 'cqu', 'AUR62043916' => 'cqu', 'AUR62043917' => 'cqu', 'BcaC02g09029' => 'bca', 'BcaC03g16700' => 'bca', 'BcaC04g22618' => 'bca', 'BcaC05g26872' => 'bca', 'BcaC05g26883' => 'bca', 'BcaC05g28804' => 'bca', 'BcaC08g43718' => 'bca', 'BNapus_Darmor_BZH_scaffold_234p00150' => 'bna', 'BNapus_Darmor_BZH_scaffold_253p00010' => 'bna', 'BolC2t10575H' => 'bol', 'BolC4t23499H' => 'bol', 'BolC8t52557H' => 'bol', 'BolC9t57492H' => 'bol', 'BolSC28t60351H' => 'bol', 'BolSC29t60446H' => 'bol', 'BolSC29t60568H' => 'bol', 'BolSC37t60758H' => 'bol', 'BolSC37t60773H' => 'bol', 'BolSC45t60881H' => 'bol', 'BolSC45t60932H' => 'bol', 'BolSC46t60982H' => 'bol', 'BolSC49t61202H' => 'bol', 'BraA07t28394Z' => 'bra', 'BraSC140t45593Z' => 'bra', 'BraSC140t45594Z' => 'bra', 'BraSC140t45612Z' => 'bra', 'BraSC151t45690Z' => 'bra', 'BraSC25t45886Z' => 'bra', 'BraSC37t46124Z' => 'bra', 'BraSC48t46275Z' => 'bra', 'BraSC58t46476Z' => 'bra', 'BraSC77t46655Z' => 'bra', 'C04p19640' => 'bna', 'C08p50280' => 'bna', 'C09p46280' => 'bna', 'CAN.G1.15' => 'can', 'CAN.G1.16' => 'can', 'CAN.G100.40' => 'can', 'CAN.G1077.2' => 'can', 'CAN.G1116.14' => 'can', 'CAN.G1185.20' => 'can', 'CAN.G1185.21' => 'can', 'CAN.G1632.13' => 'can', 'CAN.G1648.12' => 'can', 'CAN.G1690.4' => 'can', 'CAN.G17.16' => 'can', 'CAN.G1738.10' => 'can', 'CAN.G179.56' => 'can', 'CAN.G179.57' => 'can', 'CAN.G1897.6' => 'can', 'CAN.G201.4' => 'can', 'CAN.G201.49' => 'can', 'CAN.G219.16' => 'can', 'CAN.G220.2' => 'can', 'CAN.G270.12' => 'can', 'CAN.G386.11' => 'can', 'CAN.G386.12' => 'can', 'CAN.G386.9' => 'can', 'CAN.G43.3' => 'can', 'CAN.G500.69' => 'can', 'CAN.G505.14' => 'can', 'CAN.G547.9' => 'can', 'CAN.G549.3' => 'can', 'CAN.G552.7' => 'can', 'CAN.G6.7' => 'can', 'CAN.G612.6' => 'can', 'CAN.G702.46' => 'can', 'CAN.G713.19' => 'can', 'CAN.G877.5' => 'can', 'CAN.G877.6' => 'can', 'CAN.G882.2' => 'can', 'CANSAT16G0054' => 'cansat', 'CARHR281870' => 'chi', 'CARHR283420' => 'chi', 'CARHR283430' => 'chi', 'CARHR287200' => 'chi', 'CARHR287210' => 'chi', 'Ca_17162_v3' => 'car', 'Ca_17604_v3' => 'car', 'Cc01_g11920' => 'ccan', 'Cc10_g11490' => 'ccan', 'CDE02G1641' => 'cde', 'CDE02G3004' => 'cde', 'CDE11G0591' => 'cde', 'CDE12G0194' => 'cde', 'Cfa021580' => 'cfa', 'Cfa024080' => 'cfa', 'ClCG03G010320' => 'cla', 'ClCG04G004520' => 'cla', 'ClCG08G000360' => 'cla', 'ClCG08G000370' => 'cla', 'ClCG09G012340' => 'cla', 'ClCG09G013320' => 'cla', 'ClCG11G003810' => 'cla', 'COL.COLO4_01222' => 'col', 'COL.COLO4_02073' => 'col', 'COL.COLO4_02600' => 'col', 'COL.COLO4_02665' => 'col', 'COL.COLO4_02716' => 'col', 'COL.COLO4_02981' => 'col', 'COL.COLO4_02994' => 'col', 'COL.COLO4_02999' => 'col', 'COL.COLO4_03009' => 'col', 'COL.COLO4_03256' => 'col', 'COL.COLO4_03276' => 'col', 'Cpa.g.c30366.2' => 'cpa', 'Cre02.g116750' => 'cre', 'Cre10.g419050' => 'cre', 'CsaV3_5G017040' => 'csa', 'CsaV3_5G020400' => 'csa', 'CsaV3_5G020410' => 'csa', 'CsaV3_UNG208300' => 'csa', 'CsaV3_UNG210320' => 'csa', 'CSS0031571' => 'camsi', 'DCAR_010014' => 'dca', 'DCAR_016773' => 'dca', 'DCAR_022943' => 'dca', 'DCAR_032469' => 'dca', 'Dinv02153' => 'din', 'Dinv06721' => 'din', 'Dinv06736' => 'din', 'ECA039G0013' => 'eca', 'ECA039G0022' => 'eca', 'ECA039G0025' => 'eca', 'ECA232G2796' => 'eca', 'ECA238G4293' => 'eca', 'ECA247G2919' => 'eca', 'ECA247G3907' => 'eca', 'EL10Ac2g03730' => 'bvu', 'EL10Ac3g05526' => 'bvu', 'EL10Ac3g07008' => 'bvu', 'EL10Ac3g07009' => 'bvu', 'EL10Ac5g11445' => 'bvu', 'EL10Ac5g11446' => 'bvu', 'EL10Ac5g12102' => 'bvu', 'EL10Ac6g14446' => 'bvu', 'EL10Ac8g20182' => 'bvu', 'EL10As12g24014' => 'bvu', 'EL10As12g24042' => 'bvu', 'EL10As12g24043' => 'bvu', 'EL10As21g24217' => 'bvu', 'EL10As21g24218' => 'bvu', 'Eucgr.J02737' => 'egr', 'Eucgr.L00375' => 'egr', 'FAN14G4715' => 'fan', 'FAN27G0873' => 'fan', 'FvH4_2g28400' => 'fve', 'Glyma.05G092300' => 'gma', 'Glyma.12G232000' => 'gma', 'Glyma.16G115300' => 'gma', 'Gohir.1Z049478' => 'ghi', 'Gohir.1Z049992' => 'ghi', 'Gohir.A05G345878' => 'ghi', 'Gohir.A11G101333' => 'ghi', 'Gohir.A12G073533' => 'ghi', 'Gohir.D04G104024' => 'ghi', 'Gohir.D06G053900' => 'ghi', 'Gohir.D06G149650' => 'ghi', 'Gohir.D08G103800' => 'ghi', 'Gorai.001G162900' => 'gra', 'Gorai.001G167100' => 'gra', 'Gorai.003G092800' => 'gra', 'Gorai.004G111300' => 'gra', 'Gorai.006G029500' => 'gra', 'Gorai.009G407600' => 'gra', 'Gorai.010G174600' => 'gra', 'Gorai.013G213000' => 'gra', 'GSVIVG01002448001' => 'vvi', 'HanXRQChr00c0055g0571381' => 'han', 'HanXRQChr00c0272g0573031' => 'han', 'HanXRQChr00c0300g0573231' => 'han', 'HanXRQChr00c0313g0573431' => 'han', 'HanXRQChr00c0439g0574711' => 'han', 'HanXRQChr00c0439g0574721' => 'han', 'HanXRQChr00c0492g0575091' => 'han', 'HanXRQChr00c0530g0575511' => 'han', 'HanXRQChr00c0530g0575521' => 'han', 'HanXRQChr00c0746g0577121' => 'han', 'HanXRQChr01g0003491' => 'han', 'HanXRQChr01g0013361' => 'han', 'HanXRQChr02g0031291' => 'han', 'HanXRQChr03g0076781' => 'han', 'HanXRQChr03g0087141' => 'han', 'HanXRQChr03g0087151' => 'han', 'HanXRQChr04g0099311' => 'han', 'HanXRQChr04g0120711' => 'han', 'HanXRQChr07g0188291' => 'han', 'HanXRQChr08g0210221' => 'han', 'HanXRQChr10g0282491' => 'han', 'HanXRQChr10g0297121' => 'han', 'HanXRQChr10g0297131' => 'han', 'HanXRQChr10g0303431' => 'han', 'HanXRQChr11g0326651' => 'han', 'HanXRQChr11g0335391' => 'han', 'HanXRQChr11g0335421' => 'han', 'HanXRQChr13g0413471' => 'han', 'HanXRQChr14g0434331' => 'han', 'HanXRQChr17g0549111' => 'han', 'HanXRQCPg0579841' => 'han', 'HanXRQMTg0579551' => 'han', 'Haze_26092' => 'cav', 'Hma1.2p1_0149F.1_g066490' => 'hma', 'Hma1.2p1_0547F.1_g176650' => 'hma', 'Hma1.2p1_2181F.1_g316270' => 'hma', 'HPP92_007190' => 'vpl', 'HPP92_007914' => 'vpl', 'HPP92_007919' => 'vpl', 'HPP92_007921' => 'vpl', 'HPP92_026907' => 'vpl', 'HPP92_026914' => 'vpl', 'HPP92_026919' => 'vpl', 'HPP92_026921' => 'vpl', 'HPP92_028138' => 'vpl', 'HPP92_028440' => 'vpl', 'Hund03871' => 'sun', 'Hund03872' => 'sun', 'Hund03960' => 'sun', 'Hund03969' => 'sun', 'Hund04060' => 'sun', 'Hund08204' => 'sun', 'Hund08799' => 'sun', 'Hund10284' => 'sun', 'Hund12528' => 'sun', 'Hund12721' => 'sun', 'Hund12722' => 'sun', 'Hund12892' => 'sun', 'Hund17594' => 'sun', 'Hund18095' => 'sun', 'Hund19317' => 'sun', 'Hund19322' => 'sun', 'Hund25917' => 'sun', 'Hund26848' => 'sun', 'Hund27455' => 'sun', 'Hund27469' => 'sun', 'Hund27476' => 'sun', 'Hund27581' => 'sun', 'Hund27583' => 'sun', 'Hund27584' => 'sun', 'Hund27639' => 'sun', 'Hund27651' => 'sun', 'Hund27673' => 'sun', 'Hund27696' => 'sun', 'Hund27741' => 'sun', 'Hund27808' => 'sun', 'Hund27814' => 'sun', 'Hund27825' => 'sun', 'Hund27890' => 'sun', 'Hund27902' => 'sun', 'Hund27932' => 'sun', 'Hund27947' => 'sun', 'Hund27966' => 'sun', 'Hund27988' => 'sun', 'Hund27993' => 'sun', 'Hund28015' => 'sun', 'Hund28042' => 'sun', 'Hund28061' => 'sun', 'Hund28071' => 'sun', 'Hund28079' => 'sun', 'Hund28080' => 'sun', 'Hund28128' => 'sun', 'Hund28143' => 'sun', 'Hund28150' => 'sun', 'Hund28160' => 'sun', 'Hund28176' => 'sun', 'Hund28186' => 'sun', 'Hund28211' => 'sun', 'Hund28257' => 'sun', 'Hund28271' => 'sun', 'Hund28321' => 'sun', 'Hund28391' => 'sun', 'Hund28463' => 'sun', 'Hund28503' => 'sun', 'Hund28532' => 'sun', 'Hund28636' => 'sun', 'Hund28637' => 'sun', 'Hund28649' => 'sun', 'Hund28775' => 'sun', 'Hund28898' => 'sun', 'Hund28902' => 'sun', 'Hund28907' => 'sun', 'Hund28989' => 'sun', 'Hund28996' => 'sun', 'Hund28997' => 'sun', 'Hund29002' => 'sun', 'Hund29221' => 'sun', 'Hund29229' => 'sun', 'Hund29234' => 'sun', 'Hund29324' => 'sun', 'Hund29380' => 'sun', 'Hund29381' => 'sun', 'Hund29815' => 'sun', 'Hund29888' => 'sun', 'Hund30118' => 'sun', 'Hund30204' => 'sun', 'Hund30215' => 'sun', 'Hund30313' => 'sun', 'Hund30435' => 'sun', 'Hund30465' => 'sun', 'Hund30551' => 'sun', 'Hund30553' => 'sun', 'Hund30574' => 'sun', 'Hund30664' => 'sun', 'Hund30676' => 'sun', 'Hund30677' => 'sun', 'Hund30681' => 'sun', 'Hund30766' => 'sun', 'Hund30768' => 'sun', 'Hund30806' => 'sun', 'Hund30857' => 'sun', 'Hund30858' => 'sun', 'Hund30859' => 'sun', 'Hund30860' => 'sun', 'Hund30873' => 'sun', 'Hund30878' => 'sun', 'Hund30879' => 'sun', 'Hund30889' => 'sun', 'Hund30900' => 'sun', 'Hund30901' => 'sun', 'Hund30903' => 'sun', 'Hund30904' => 'sun', 'Hund30905' => 'sun', 'Hund30906' => 'sun', 'Hund30907' => 'sun', 'Hund30908' => 'sun', 'Hund30909' => 'sun', 'Hund30910' => 'sun', 'Hund30911' => 'sun', 'Hund30931' => 'sun', 'Hund30932' => 'sun', 'Hund30941' => 'sun', 'Hund30959' => 'sun', 'Hund30978' => 'sun', 'Hund30979' => 'sun', 'Hund30980' => 'sun', 'Hund30992' => 'sun', 'Hund31008' => 'sun', 'Hund31010' => 'sun', 'Hund31013' => 'sun', 'Hund31014' => 'sun', 'Hund31234' => 'sun', 'Lalb_Chr00c29g0408021' => 'lal', 'Lalb_Chr01g0011011' => 'lal', 'Lalb_Chr07g0191441' => 'lal', 'Lalb_Chr07g0191451' => 'lal', 'Lalb_Chr07g0192211' => 'lal', 'Lalb_Chr07g0192221' => 'lal', 'Lalb_Chr09g0335301' => 'lal', 'Lalb_Chr10g0094131' => 'lal', 'Lalb_Chr21g0315901' => 'lal', 'Lj2A1231T102' => 'lonja', 'Lj2A1236G71' => 'lonja', 'Lj2A1239T197' => 'lonja', 'Lj2C1236G61' => 'lonja', 'Lj2C1236T50' => 'lonja', 'Lj2C1238T11' => 'lonja', 'Lj2P1232T89' => 'lonja', 'LjContig00318g0005889' => 'lja', 'LjContig00439g0018024' => 'lja', 'LjContig00489g0005130' => 'lja', 'Lsat_1_v5_gn_0_17620' => 'lsa', 'Lsat_1_v5_gn_0_28780' => 'lsa', 'Lsat_1_v5_gn_0_38060' => 'lsa', 'Lsat_1_v5_gn_0_43360' => 'lsa', 'Lsat_1_v5_gn_1_2921' => 'lsa', 'Lsat_1_v5_gn_1_38700' => 'lsa', 'Lsat_1_v5_gn_1_68880' => 'lsa', 'Lsat_1_v5_gn_1_6921' => 'lsa', 'Lsat_1_v5_gn_1_88060' => 'lsa', 'Lsat_1_v5_gn_2_50760' => 'lsa', 'Lsat_1_v5_gn_4_102080' => 'lsa', 'Lsat_1_v5_gn_5_110781' => 'lsa', 'Lsat_1_v5_gn_5_138100' => 'lsa', 'Lsat_1_v5_gn_5_140141' => 'lsa', 'Lsat_1_v5_gn_5_148960' => 'lsa', 'Lsat_1_v5_gn_5_181820' => 'lsa', 'Lsat_1_v5_gn_7_58461' => 'lsa', 'Lsat_1_v5_gn_7_58481' => 'lsa', 'Lsat_1_v5_gn_8_122301' => 'lsa', 'Lsat_1_v5_gn_8_134580' => 'lsa', 'Lsat_1_v5_gn_8_151041' => 'lsa', 'Lsat_1_v5_gn_8_1961' => 'lsa', 'Lsat_1_v5_gn_8_5900' => 'lsa', 'Lsat_1_v5_gn_8_76321' => 'lsa', 'Lsat_1_v5_gn_9_109801' => 'lsa', 'Lsat_1_v5_gn_9_53101' => 'lsa', 'Mapoly0054s0104' => 'mpo', 'Mapoly0488s0001' => 'mpo', 'Mapoly4078s0001' => 'mpo', 'MCO07G288' => 'mco', 'MCO10G241' => 'mco', 'MD09G1272600' => 'mdo', 'MD16G1271600' => 'mdo', 'Medtr0002s0550' => 'mtr', 'Medtr0212s0040' => 'mtr', 'Medtr2g008350' => 'mtr', 'Medtr2g020310' => 'mtr', 'Medtr2g086960' => 'mtr', 'Medtr3g108390' => 'mtr', 'Medtr3g108400' => 'mtr', 'Medtr4g044667' => 'mtr', 'Medtr4g079170' => 'mtr', 'MELO3C000196.2' => 'cme', 'MELO3C000423.2' => 'cme', 'MELO3C005017.2' => 'cme', 'MELO3C005020.2' => 'cme', 'MELO3C013037.2' => 'cme', 'MELO3C017934.2' => 'cme', 'MELO3C019951.2' => 'cme', 'MELO3C020639.2' => 'cme', 'MELO3C026354.2' => 'cme', 'MELO3C026579.2' => 'cme', 'MELO3C026655.2' => 'cme', 'MELO3C026656.2' => 'cme', 'MELO3C027715.2' => 'cme', 'MELO3C027844.2' => 'cme', 'MELO3C028204.2' => 'cme', 'MELO3C028913.2' => 'cme', 'MELO3C028915.2' => 'cme', 'MELO3C030625.2' => 'cme', 'MELO3C031090.2' => 'cme', 'MELO3C032362.2' => 'cme', 'MELO3C033726.2' => 'cme', 'MELO3C035262.2' => 'cme', 'MELO3C035312.2' => 'cme', 'MELO3C035315.2' => 'cme', 'MELO3C035316.2' => 'cme', 'Migut.D01334' => 'egut', 'Migut.D01409' => 'egut', 'Migut.E00894' => 'egut', 'Nitab4.5_0000007g0130' => 'nta', 'Nitab4.5_0000032g0450' => 'nta', 'Nitab4.5_0000094g0170' => 'nta', 'Nitab4.5_0000172g0540' => 'nta', 'Nitab4.5_0000172g2210' => 'nta', 'Nitab4.5_0000513g0140' => 'nta', 'Nitab4.5_0000531g0030' => 'nta', 'Nitab4.5_0000716g0060' => 'nta', 'Nitab4.5_0000716g0070' => 'nta', 'Nitab4.5_0001152g0650' => 'nta', 'Nitab4.5_0001152g0660' => 'nta', 'Nitab4.5_0001152g0770' => 'nta', 'Nitab4.5_0001152g0810' => 'nta', 'Nitab4.5_0001170g0170' => 'nta', 'Nitab4.5_0001303g0090' => 'nta', 'Nitab4.5_0001449g0080' => 'nta', 'Nitab4.5_0001788g0060' => 'nta', 'Nitab4.5_0001796g0290' => 'nta', 'Nitab4.5_0001887g0010' => 'nta', 'Nitab4.5_0002290g0080' => 'nta', 'Nitab4.5_0002316g0050' => 'nta', 'Nitab4.5_0002316g0060' => 'nta', 'Nitab4.5_0002326g0020' => 'nta', 'Nitab4.5_0002418g0020' => 'nta', 'Nitab4.5_0003644g0050' => 'nta', 'Nitab4.5_0005159g0030' => 'nta', 'Nitab4.5_0006085g0030' => 'nta', 'Nitab4.5_0006085g0040' => 'nta', 'Nitab4.5_0006085g0090' => 'nta', 'Nitab4.5_0007096g0010' => 'nta', 'Nitab4.5_0007876g0020' => 'nta', 'Nitab4.5_0008916g0040' => 'nta', 'Nitab4.5_0009078g0050' => 'nta', 'Nitab4.5_0010333g0080' => 'nta', 'Nn003s41390' => 'nnu', 'Nn020s41496' => 'nnu', 'Nn044s41816' => 'nnu', 'Nn092s42877' => 'nnu', 'Nn1g01956' => 'nnu', 'Nn1g09935' => 'nnu', 'Nn1g09962' => 'nnu', 'Nn1g10007' => 'nnu', 'Nn1g10146' => 'nnu', 'Nn2g15006' => 'nnu', 'Nn4g24958' => 'nnu', 'Nn8g39743' => 'nnu', 'Oeu010682.1' => 'oeu', 'Oeu012779.1' => 'oeu', 'Oeu012800.1' => 'oeu', 'Oeu022567.1' => 'oeu', 'Oeu026528.1' => 'oeu', 'Oeu030840.1' => 'oeu', 'Oeu039802.1' => 'oeu', 'Oeu045557.1' => 'oeu', 'Peaxi162Scf00211g00233' => 'pax', 'Peaxi162Scf00211g00235' => 'pax', 'Peaxi162Scf00477g00055' => 'pax', 'Peaxi162Scf00553g00013' => 'pax', 'Peaxi162Scf00625g00027' => 'pax', 'Peaxi162Scf00842g00429' => 'pax', 'PGR028G0002' => 'pgr', 'PGR111G0126' => 'pgr', 'PGSC0003DMG400000352' => 'stu', 'PGSC0003DMG400008476' => 'stu', 'PGSC0003DMG400013849' => 'stu', 'PGSC0003DMG401022238' => 'stu', 'Potri.001G275604' => 'ptr', 'Potri.007G062242' => 'ptr', 'Potri.012G059700' => 'ptr', 'Potri.013G138000' => 'ptr', 'PRCOL_00002269' => 'pco', 'PRCOL_00005968' => 'pco', 'Psat0s1586g0040' => 'psa', 'Psat0s1586g0080' => 'psa', 'Psat0s2288g0080' => 'psa', 'Psat0s2754g0200' => 'psa', 'Psat0s2778g0080' => 'psa', 'Psat0s2961g0120' => 'psa', 'Psat1g003840' => 'psa', 'Psat1g120720' => 'psa', 'Psat2g111080' => 'psa', 'Psat3g012200' => 'psa', 'Psat3g040000' => 'psa', 'Psat3g186480' => 'psa', 'Psat4g185640' => 'psa', 'Psat5g134760' => 'psa', 'Psat6g219360' => 'psa', 'Psat7g093400' => 'psa', 'Psat7g108720' => 'psa', 'Psat7g138400' => 'psa', 'PSO548G0104' => 'pso', 'QL03p055017' => 'qlo', 'QL06p018440' => 'qlo', 'QL11p017578' => 'qlo', 'QL93p0803_0001' => 'qlo', 'RcHm_v2.0_Chr5g0029951' => 'rch', 'RcHm_v2.0_Chr5g0029961' => 'rch', 'RcHm_v2.0_Chr5g0029971' => 'rch', 'RcHm_v2.0_CPg0502461' => 'rch', 'RcHm_v2.0_MTg0498251' => 'rch', 'Rhsim02G0069000' => 'rsi', 'Rhsim07G0202400' => 'rsi', 'RhsimMtG0001000' => 'rsi', 'RhsimMtG0007400' => 'rsi', 'RhsimPtG0004600' => 'rsi', 'Sabra18G0056000' => 'sbr', 'SabraMtG0010000' => 'sbr', 'SabraPtG0000800' => 'sbr', 'SalBow1G2727' => 'sbo', 'SalBow1G7966' => 'sbo', 'Sc09g0006550' => 'sci', 'Sc09g0006560' => 'sci', 'Sc11g0004370' => 'sci', 'Sc12g0006400' => 'sci', 'Sc12g0007860' => 'sci', 'Sc13g0007540' => 'sci', 'Sc15g0001770' => 'sci', 'Sc16g0004850' => 'sci', 'Sc20g0004260' => 'sci', 'ScUNg0001070' => 'sci', 'Sed0001860' => 'sed', 'Sed0004664' => 'sed', 'Sed0022396' => 'sed', 'Sed0023980' => 'sed', 'Sed0024943' => 'sed', 'SEGI_00146' => 'sgi', 'SEGI_02038' => 'sgi', 'SEGI_02904' => 'sgi', 'SEGI_04225' => 'sgi', 'SEGI_06240' => 'sgi', 'SEGI_14461' => 'sgi', 'SEGI_15083' => 'sgi', 'SEGI_18268' => 'sgi', 'SEGI_18362' => 'sgi', 'SEGI_21726' => 'sgi', 'SEGI_27666' => 'sgi', 'SEGI_32153' => 'sgi', 'SEGI_32948' => 'sgi', 'SEGI_33019' => 'sgi', 'SEGI_33411' => 'sgi', 'SEGI_33713' => 'sgi', 'SEGI_35067' => 'sgi', 'SEGI_36561' => 'sgi', 'SEGI_39320' => 'sgi', 'SEGI_39995' => 'sgi', 'SGA_v2.0_scaffold119G32690' => 'sas', 'SGA_v2.0_scaffold137G35140' => 'sas', 'SGA_v2.0_scaffold150G36660' => 'sas', 'SGA_v2.0_scaffold245G44434' => 'sas', 'SGA_v2.0_scaffold245G44608' => 'sas', 'SGA_v2.0_scaffold400G50835' => 'sas', 'SGA_v2.0_scaffold488G52396' => 'sas', 'SGA_v2.0_scaffold687G53454' => 'sas', 'SGA_v2.0_scaffold6G03286' => 'sas', 'SHI15040' => 'shi', 'SHI25013' => 'shi', 'SHI25014' => 'shi', 'SHI27344' => 'shi', 'SHI31533' => 'shi', 'SHI33105' => 'shi', 'SHI33106' => 'shi', 'SHI34615' => 'shi', 'SHI34624' => 'shi', 'SHI34625' => 'shi', 'SHI34994' => 'shi', 'SHI34999' => 'shi', 'SHI35186' => 'shi', 'SHI35236' => 'shi', 'SHI35290' => 'shi', 'SHI35453' => 'shi', 'SHI35454' => 'shi', 'SHI35456' => 'shi', 'SHI35976' => 'shi', 'SHI35977' => 'shi', 'SHI35978' => 'shi', 'SHI36018' => 'shi', 'SHI36076' => 'shi', 'SHI36077' => 'shi', 'SHI36078' => 'shi', 'SHI36137' => 'shi', 'SHI36371' => 'shi', 'SHI36573' => 'shi', 'SHI36586' => 'shi', 'SHI36772' => 'shi', 'SHI36783' => 'shi', 'SHI36936' => 'shi', 'SHI36974' => 'shi', 'SHI37011' => 'shi', 'SHI37066' => 'shi', 'SHI37137' => 'shi', 'SHI37161' => 'shi', 'SHI37167' => 'shi', 'SHI37853' => 'shi', 'SHI38032' => 'shi', 'SHI38101' => 'shi', 'SHI38215' => 'shi', 'SHI38464' => 'shi', 'SHI38465' => 'shi', 'SHI38478' => 'shi', 'SHI38479' => 'shi', 'SHI38480' => 'shi', 'SHI38563' => 'shi', 'SHI38586' => 'shi', 'SHI38845' => 'shi', 'SHI38900' => 'shi', 'SHI39077' => 'shi', 'SHI39121' => 'shi', 'SHI39479' => 'shi', 'SHI39779' => 'shi', 'SHI39780' => 'shi', 'SHI39989' => 'shi', 'SHI40316' => 'shi', 'SHI40904' => 'shi', 'SHI40905' => 'shi', 'SHI40933' => 'shi', 'SHI41243' => 'shi', 'SHI41650' => 'shi', 'SHI42052' => 'shi', 'SHI42053' => 'shi', 'SHI42286' => 'shi', 'SHI43389' => 'shi', 'SHI43453' => 'shi', 'SHI44331' => 'shi', 'SHI45577' => 'shi', 'SHI46272' => 'shi', 'SHI46325' => 'shi', 'SHI46326' => 'shi', 'SHI46361' => 'shi', 'SHI47631' => 'shi', 'SHI47781' => 'shi', 'SHI48648' => 'shi', 'SHI49632' => 'shi', 'SHI49908' => 'shi', 'SHI50075' => 'shi', 'SHI50162' => 'shi', 'SHI50288' => 'shi', 'SHI52852' => 'shi', 'SHI53551' => 'shi', 'SMO053G0005' => 'smo', 'SMO086G0031' => 'smo', 'Solyc00g500050.1' => 'sly', 'Solyc00g500133.1' => 'sly', 'Solyc00g500203.1' => 'sly', 'Solyc00g500292.1' => 'sly', 'Solyc00g500323.1' => 'sly', 'Solyc00g500332.1' => 'sly', 'Solyc00g500345.1' => 'sly', 'Solyc00g500358.1' => 'sly', 'Solyc02g012000.1' => 'sly', 'Solyc02g012010.3' => 'sly', 'Solyc03g033440.1' => 'sly', 'Solyc04g071300.3' => 'sly', 'Solyc06g072540.2' => 'sly', 'Solyc07g027010.1' => 'sly', 'Solyc11g039980.3' => 'sly', 'Solyc11g051170.2' => 'sly', 'Sopen00g001040' => 'spe', 'Sopen03g010800' => 'spe', 'Sopen05g017080' => 'spe', 'Sopen07g014910' => 'spe', 'Sopen08g006620' => 'spe', 'Sopen11g014330' => 'spe', 'Sp3g25910' => 'spa', 'Sp3g25960' => 'spa', 'TAR477G0001' => 'tar', 'TAR628G0591' => 'tar', 'TAR628G1600' => 'tar', 'Thecc.02G216100' => 'tca', 'Thecc.10G146800' => 'tca', 'TPR.G18523' => 'tpr', 'TPR.G5960' => 'tpr', 'TWI34G0202' => 'twi', 'TWI34G0791' => 'twi', 'TWI53G0911' => 'twi', 'unitig_87.g27929' => 'ugi', 'unitig_87.g27985' => 'ugi', 'unitig_91.g26492' => 'ugi', 'vmacro20560' => 'vma', 'vmacro22404' => 'vma', 'vmacro23104' => 'vma', 'VMungo0464G1519' => 'vmu', 'Zm00001eb039180' => 'zma', 'Zm00001eb238260' => 'zma', 'Zm00001eb434640' => 'zma', 'Zm00001eb434660' => 'zma', 'Zm00001eb434980' => 'zma', 'Zm00001eb435450' => 'zma', 'Zm00001eb435720' => 'zma', 'Zm00001eb436190' => 'zma', 'Zm00001eb436240' => 'zma', 'Zm00001eb436300' => 'zma', 'Zm00001eb436340' => 'zma', 'Zm00001eb436480' => 'zma', 'Zm00001eb436800' => 'zma', 'Zm00001eb437040' => 'zma', 'Zm00001eb437230' => 'zma', 'Zm00001eb437490' => 'zma', 'Zm00001eb437510' => 'zma', 'Zm00001eb440810' => 'zma', 'Zm00001eb441570' => 'zma', 'Zm00001eb441850' => 'zma', 'Zm00001eb442490' => 'zma', 'Zm00001eb442780' => 'zma', 'Zm00001eb442880' => 'zma' ) $gf_id = 'HOM05D000743' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000743' ) $data_identifier = 'HOM05D000743' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 6, 'aar' => (int) 4, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 2, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 2, 'cqu' => (int) 18, 'bca' => (int) 7, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 36, 'cansat' => (int) 1, 'chi' => (int) 5, 'car' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 2, 'cla' => (int) 7, 'col' => (int) 11, 'cpa' => (int) 1, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 1, 'dca' => (int) 4, 'din' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 14, 'egr' => (int) 2, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 3, 'ghi' => (int) 9, 'gra' => (int) 8, 'vvi' => (int) 1, 'han' => (int) 32, 'cav' => (int) 1, 'hma' => (int) 3, 'vpl' => (int) 10, 'sun' => (int) 126, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 26, 'mpo' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 2, 'mtr' => (int) 9, 'cme' => (int) 25, 'egut' => (int) 3, 'nta' => (int) 34, 'nnu' => (int) 12, 'oeu' => (int) 8, 'pax' => (int) 6, 'pgr' => (int) 2, 'stu' => (int) 4, 'ptr' => (int) 4, 'pco' => (int) 2, 'psa' => (int) 18, 'pso' => (int) 1, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 10, 'sed' => (int) 5, 'sgi' => (int) 20, 'sas' => (int) 9, 'shi' => (int) 84, 'smo' => (int) 2, 'sly' => (int) 16, 'spe' => (int) 6, 'spa' => (int) 2, 'tar' => (int) 3, 'tca' => (int) 2, 'tpr' => (int) 2, 'twi' => (int) 3, 'ugi' => (int) 3, 'vma' => (int) 3, 'vmu' => (int) 1, 'zma' => (int) 23 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1